PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_150530_jqqr.t2
Common NameFL1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24390.8 Da    PI: 8.8176
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_150530_jqqr.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-27958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krie+ks rqvtfskRr g++KKA ELS+LCd++vav++fs++g+lye+ 
  Bv6_150530_jqqr.t2  9 KRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFV 58
                        79**********************************************96 PP

2K-box49.41.9e-17971762099
               K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           a ++   e  ++  R l G +Le+L l++ ++Le+qL ++l + R++K++l+le+i +l ++ek l++en++L+ +++
  Bv6_150530_jqqr.t2  97 SCAEVQTCGELVKSVERYLEGPELENLRLEDFMRLERQLADALVQTRTRKTQLMLESIGTLSEQEKLLKQENEQLKDEVA 176
                         445555555666677799*********************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.06E-29178IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.936161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-37160IPR002100Transcription factor, MADS-box
CDDcd002656.59E-36280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.26691184IPR002487Transcription factor, K-box
PfamPF014861.9E-13106175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGRRKIEMKR IEDKSSRQVT FSKRRSGLIK KARELSILCD VDVAVLVFSN RGRLYEFVNS  60
SSSSSLSQIL KRYQDSTAAD GKASIAAVET EQSSPSSCAE VQTCGELVKS VERYLEGPEL  120
ENLRLEDFMR LERQLADALV QTRTRKTQLM LESIGTLSEQ EKLLKQENEQ LKDEVANLIG  180
IPKSRNHKDL GVNNLMEVDA DRQYSQPLRT LPLLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-17175171Myocyte-specific enhancer factor 2B
1tqe_Q1e-17175171Myocyte-specific enhancer factor 2B
1tqe_R1e-17175171Myocyte-specific enhancer factor 2B
1tqe_S1e-17175171Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1892100.0DQ189210.1 Beta vulgaris FLC-like 1 splice variant 1 (FL1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682731.11e-155PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLA2CHJ41e-155A2CHJ4_BETVU; FLC-like 1 splice variant 1
TrEMBLA2T9D01e-155A2T9D0_BETVU; FLC-like 1 splice variant 1
STRINGSolyc12g087830.1.11e-41(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-34MIKC_MADS family protein
Publications ? help Back to Top
  1. Reeves PA, et al.
    Evolutionary conservation of the FLOWERING LOCUS C-mediated vernalization response: evidence from the sugar beet (Beta vulgaris).
    Genetics, 2007. 176(1): p. 295-307
    [PMID:17179080]